Megan Guidry Open Lab Notebook

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KAPA Stranded mRNA Seq Prep

KAPA Stranded mRNA Seq Prep of Larval Oyster Samples

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DNA/RNA Extractions of 2024 Larval Oyster Filters

Larval Genomic Samples - 2024

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Zymo DNA Extractions of Juvenile Oysters Protocol

Using Zymo Quick-DNA Miniprep Plus Kit

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Zymo RNA Extractions of Juvenile Oysters Protocol

Using Zymo Quick-RNA Miniprep Plus Kit

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Zymo DNA/RNA Extractions of Juvenile Oysters Protocol

Using Zymo Quick-DNA/RNA Miniprep Plus Kit

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DNA/RNA Extractions of 2023 Larval Oyster Filters

Larval Genomic Samples - 2023

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Practice DNA/RNA Extractions of Larval Oyster Filters

Purpose: Extracting DNA and RNA from larval oyster samples from ARC1 and MV1 Vibrio challenges. Samples were chosen for practice based on the number of larvae preserved in each sample (see below).

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Zymo DNA/RNA Extractions of Larval Oyster Filters Protocol

Using Zymo Quick-DNA/RNA Miniprep Plus Kit

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ROD challenge protocol (version 2)

ROD = Roseovarius Oyster Disease

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Larval Density Sample Processing Protocol

Written by Jon Puritz, Amy Zyck and Maggie Schedl

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ROD challenge protocol (version 1)

ROD = Roseovarius Oyster Disease

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Vibrio (RE22) challenge protocol (version 1)

Goal stocking density for challenge —> 50 larvae/ml

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Updates to HSC DNA Extraction Protocol

Modified protocol formatting from Natalie Ameral’s protocol
Changes include:

  • Materials required section (with # of tubes per sample and suggested tube labels)
  • Purpose added
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